CDS

Accession Number TCMCG007C05881
gbkey CDS
Protein Id XP_009132293.1
Location join(5343391..5343509,5343594..5343802,5343901..5343980,5344062..5344166,5344242..5344365,5344448..5344509,5344594..5344689,5344759..5344820,5344916..5345012,5345100..5345174,5345253..5345351,5345442..5345591,5345679..5345771,5345860..5345937,5346027..5346086)
Gene LOC103856920
GeneID 103856920
Organism Brassica rapa

Protein

Length 502aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009134045.3
Definition periodic tryptophan protein 1 homolog [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category S
Description Contains the following InterPro domains WD40 repeat 2 (InterPro IPR019782), WD40 repeat, conserved site (InterPro IPR019775), WD40 repeat (InterPro IPR001680), G-protein beta WD-40 repeat, region (InterPro IPR020472), WD40 repeat-like-containing domain (InterPro IPR011046), WD40-repeat-containing domain (InterPro IPR017986), WD40 YVTN repeat-like-containing domain (InterPro IPR015943), WD40 repeat, subgroup (InterPro IPR019781)
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14791        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0001932        [VIEW IN EMBL-EBI]
GO:0001933        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005794        [VIEW IN EMBL-EBI]
GO:0006325        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006356        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006479        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008213        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009966        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010563        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0010646        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016569        [VIEW IN EMBL-EBI]
GO:0016570        [VIEW IN EMBL-EBI]
GO:0016571        [VIEW IN EMBL-EBI]
GO:0018022        [VIEW IN EMBL-EBI]
GO:0018023        [VIEW IN EMBL-EBI]
GO:0018193        [VIEW IN EMBL-EBI]
GO:0018205        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019220        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0023051        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0031399        [VIEW IN EMBL-EBI]
GO:0031400        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032269        [VIEW IN EMBL-EBI]
GO:0033135        [VIEW IN EMBL-EBI]
GO:0033137        [VIEW IN EMBL-EBI]
GO:0033139        [VIEW IN EMBL-EBI]
GO:0033140        [VIEW IN EMBL-EBI]
GO:0034770        [VIEW IN EMBL-EBI]
GO:0034773        [VIEW IN EMBL-EBI]
GO:0034968        [VIEW IN EMBL-EBI]
GO:0035064        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042325        [VIEW IN EMBL-EBI]
GO:0042326        [VIEW IN EMBL-EBI]
GO:0042393        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045595        [VIEW IN EMBL-EBI]
GO:0045597        [VIEW IN EMBL-EBI]
GO:0045893        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0045936        [VIEW IN EMBL-EBI]
GO:0045943        [VIEW IN EMBL-EBI]
GO:0046425        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051094        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051174        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051248        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0140030        [VIEW IN EMBL-EBI]
GO:0140034        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901836        [VIEW IN EMBL-EBI]
GO:1901838        [VIEW IN EMBL-EBI]
GO:1902531        [VIEW IN EMBL-EBI]
GO:1902680        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903508        [VIEW IN EMBL-EBI]
GO:1904892        [VIEW IN EMBL-EBI]
GO:1990889        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000736        [VIEW IN EMBL-EBI]
GO:2000738        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGATAACTGCACTTTCGTGGATACCTAAAGGGTCTTTAAAGGCTGTTCCTGATGCTGCTGAGCCTCCTTCAAAGGAAGAGATCAAGGAGCTCATTGAGAGTGGAGCTTTCGTGGGAAGCGTGGATGGTAGTAACGAGGATGGAGAAGATATAGAGGAAGAAGAAGAAGAAGAAGATGGGGATCAGATTAGTGAAGTTGATCGTGCCAAGGCTGTAGCAGAAGCTTTTGGTAAATCATCCAATAGCAAATCTTCCTCTATGGAGGTTGATGAGGTAGCTGCTGCGATGAAAGAACTCGACATGGATAACTATGATGAAGAGGATGATGGAATTGAACTCTTCAGCTCTGGGCTTGGGGATCTTTATTATCCAAGCAATGAGTTGGATCCCTATCTGAAGGATGCTGCTGATGATGATGATGACGATGAAGAGGATATTGATGATACGACTATCAAGCCAACAGATTCAGTGATTATCTGCGCTAGGAATGAAGATGAAGTCAGCCATCTAGAGGTTTATGTGTACGAAGAATCATCCAACGGCTCACCAAACATGTATGTTCATCATCACATAGTTATACCAGAGTTTCCGTTGTGTACTGCATGGATTGATTGTCCTCTTAAAGGAGGGGACAAAGGGAATTTTGTAGCTATTGGATCAAAGGATTCGCCGACGATAGAGATATGGGATCTTGACGTTAGGGACGAGGTGCTCCCTTGTGTGCAACTAGGAGGAATAGAGGAGATGAAGATTATCAAGAAAAAGAAGAGTAAGAAAGAGAAGATCAGGAAGCCGATATACAAAGAAGGCAGCCACACTGATTCAGTACTTGGTCTTGCTTGGAACAAGGAGTTCCGGAATATACTGGCTAGTGCTAGTGCCGACAGAAAAGTTAAGGTGTGGGATGTGGCTACTGGACAGTGTAAGATCACTATGGAGCATCACACAAAGGAGGTTCAAGCGGTTGCTTGGAATCATTATGCTCCAGAAGTGCTTCTCAGTGGGTCATTTGATCAGACTGTTGTATTGAAAGACGGACGACAACCTTCGCACTCTGGTTTCAAATGGTCTGTCATGTCTGATGTCGAAAGCTTAGCCTGGAATCCCCACAATGAACACTCCTTTGTGGTAAGTCTTGAGGATGGAACCGTGAAAGGTTTTGATATACGCGTCGCACAGTCAGGTTCAGATTCTGATTTAAAACCAAGCTTTACTATCCAAGCACATGACCAAGACAAAGGAGTCTCCTCCATCTCATACAACACTTCTGCACCCAATCTTTTGGCTACGGGGTCTATGGATAAAACGGTAAAACTTTGGGATCTTTCAAACAACGAGCCTTCATGCATTACTTCACACAAACCAAAAGCTGGAGCTGTATTCTCCATTTCCTTCTCAGCAGACAATCCTTTCTTGCTTGCTATTGGTGGCTCAAAGGGAGAGCTACATGTTTGGGATACGCTCTTGGACGCTAACGTCGCTCGCAAATATGGGAAAAACCAATCTTGA
Protein:  
MITALSWIPKGSLKAVPDAAEPPSKEEIKELIESGAFVGSVDGSNEDGEDIEEEEEEEDGDQISEVDRAKAVAEAFGKSSNSKSSSMEVDEVAAAMKELDMDNYDEEDDGIELFSSGLGDLYYPSNELDPYLKDAADDDDDDEEDIDDTTIKPTDSVIICARNEDEVSHLEVYVYEESSNGSPNMYVHHHIVIPEFPLCTAWIDCPLKGGDKGNFVAIGSKDSPTIEIWDLDVRDEVLPCVQLGGIEEMKIIKKKKSKKEKIRKPIYKEGSHTDSVLGLAWNKEFRNILASASADRKVKVWDVATGQCKITMEHHTKEVQAVAWNHYAPEVLLSGSFDQTVVLKDGRQPSHSGFKWSVMSDVESLAWNPHNEHSFVVSLEDGTVKGFDIRVAQSGSDSDLKPSFTIQAHDQDKGVSSISYNTSAPNLLATGSMDKTVKLWDLSNNEPSCITSHKPKAGAVFSISFSADNPFLLAIGGSKGELHVWDTLLDANVARKYGKNQS